Physical chemist and computational biologist
Philip Eric Bourne (born 1953) is an Australian
bioinformatician ,
[10] non-fiction writer,
[7] and businessman.
[9] He is currently Stephenson Chair of Data Science and Director of the School of Data Science and Professor of Biomedical Engineering
[11] and was the first associate director for Data Science at the
National Institutes of Health , where his projects include managing the
Big Data to Knowledge initiative, and formerly Associate Vice Chancellor at
UCSD .
[12] He has contributed to textbooks and is a strong supporter of open-access literature and software. His diverse interests have spanned
structural biology ,
medical informatics ,
information technology , structural
bioinformatics ,
scholarly communication and
pharmaceutical sciences .
[10] His papers are highly cited, and he has an
h-index above 80.
[13]
[14]
[5]
Education
Bourne was trained as a physical chemist in the mid to late 1970s and obtained his PhD in 1979
[6] at the
Flinders University .
Career and research
After his PhD, Bourne moved to the
University of Sheffield to do
postdoctoral research during 1979–1981,
[15] followed by a move to
Columbia University , New York, in 1981. In 1995 he moved to
University of California, San Diego , where he was a Professor in the Department of Pharmacology. In 2014, he moved to NIH to become its associate director for Data Science. In January 2017, it was announced that he had accepted a position as director of
University of Virginia 's Data Science Institute.
[16]
He is known for writing the book
Unix for
VMS Users (1990)
[7] and for being co-developer of the
Combinatorial Extension algorithm for the
three-dimensional alignment of protein structures ,
[17] together with I. Shindyalov (1998). In 1999 he became co-director of the
Protein Data Bank .
[18] He was president of the
ISCB (2002–2003).
[19] He is a fellow of the
American Medical Informatics Association since 2002.
[20] He is founding Editor in Chief of
PLoS Computational Biology (2005-). In 2007 he co-founded
SciVee .
[9] Bourne is an editor of the popular Ten Simple Rules series of editorials published in the
PLoS Computational Biology journal.
[21] He has served as the Associate Vice Chancellor for Innovation and Industrial Alliances
[12] and a professor of pharmacology at the
Skaggs School of Pharmacy and Pharmaceutical Sciences at the
University of California, San Diego (UCSD).
[22]
[23]
He is an advisor to the
Hypothes.is project
[24] and associate director for Data Science at the
National Institutes of Health where his projects include managing the
Big Data to Knowledge initiative.
[25]
[26]
Publications
Bourne is author of numerous scientific articles and book chapters and editor of the Structural Bioinformatics textbook.
[27]
[28] and Pharmacy Informatics
[29] Other publications
[5] include:
Structural Bioinformatics 1st edition
[27]
Structural Bioinformatics 2nd edition
[28]
Pharmacy Informatics
[29]
Unix for Vms Users
[7]
Bourne, Philip E. (1997-01-01). A Cookbook for Serving the Internet for UNIX . Prentice Hall.
ISBN
9780135199923 .
Hart, David L.; Bourne, Philip E. (1998-08-12). Mac OS 8 Web Server Cookbook (1st ed.). Prentice Hall PTR.
ISBN
9780135200162 .
Bourne, Philip E. (2000-01-01). Underground Guide Unix . Prentice Hall.
ISBN
9780131844582 .
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. (2000-01-01).
"The Protein Data Bank" . Nucleic Acids Research . 28 (1): 235–242.
doi :
10.1093/nar/28.1.235 .
ISSN
0305-1048 .
PMC
102472 .
PMID
10592235 .
Awards and honors
Bourne was elected
Fellow of the AAAS under Pharmaceutical Sciences in 2011
[1] and
Fellow of the
International Society for Computational Biology (ISCB) in 2011.
[2]
In 2010 he won Microsoft's
Jim Gray
e-Science award
[3] and in 2009 won the
Benjamin Franklin Award (2009).
[4]
[30]
Personal life
Bourne has been married since 1983 to Roma Chalupa and they have two children: Scott Bourne (1985-) and Melanie Bourne (1997-).[
citation needed ] His interests include motorcycles,
[31] flying, and hiking
References
^
a
b
"Dr. Phil Bourne elected AAAS Fellow under Pharmaceutical Sciences" . Pharmacy.ucsd.edu. Retrieved 2011-02-27 .
^
a
b
"ISCB fellows" . Archived from
the original on 2015-03-28. Retrieved 2011-08-15 .
^
a
b
"Philip E. Bourne wins Microsoft's 2010 Jim Gray eScience Award" . Eurekalert.org. 2010-10-18. Retrieved 2011-02-27 .
^
a
b
"Benjamin Franklin Award" . Bioinformatics.org. Retrieved 2011-02-27 .
^
a
b
c
Philip Bourne publications indexed by
Google Scholar
^
a
b
Bourne, Philip Eric (1979).
Crystal structure analyses : metal complexes of biological interest and the stereochemistry of substituted phonylbicyclooctanes (PhD thesis). Flinders University.
OCLC
708090572 .
^
a
b
c
d Bourne, Phil E (1990).
Unix for VMS Users . Digital Press Newton, MA, USA.
ISBN
1-55558-034-3 .
^
Berman, H. M. ; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.;
Bourne, P. (2000).
"The Protein Data Bank" . Nucleic Acids Research . 28 (1): 235–242.
doi :
10.1093/nar/28.1.235 .
PMC
102472 .
PMID
10592235 .
^
a
b
c Fink, JL; Bourne, PE (2007).
"Reinventing Scholarly Communication for the Electronic Age" . CTWatch Quarterly . 3 (3).
^
a
b
Philip Bourne publications indexed by the
Scopus bibliographic database. (subscription required)
^
"Philip e. Bourne" . 6 July 2017.
^
a
b
"Archived copy" (PDF) . Archived from
the original (PDF) on 2012-07-31. Retrieved 2012-07-02 . {{
cite web }}
: CS1 maint: archived copy as title (
link )
^
page at the University of Virginia
^
bournes old website
^ Clegg, G. A.; Stansfield, R. F. D.; Bourne, P. E.; Harrison, P. M. (1980). "Helix packing and subunit conformation in horse spleen apoferritin". Nature . 288 (5788): 298–300.
Bibcode :
1980Natur.288..298C .
doi :
10.1038/288298a0 .
PMID
7432529 .
S2CID
4335735 .
^
"UVA Names NIH Researcher as New Director of Data Science Institute" . 11 January 2017.
^ Shindyalov, I. N.; Bourne, P. E. (1998).
"Protein structure alignment by incremental combinatorial extension (CE) of the optimal path" . Protein Engineering Design and Selection . 11 (9): 739–747.
doi :
10.1093/protein/11.9.739 .
PMID
9796821 .
^
Berman, H. M. ; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.;
Bourne, P. (2000).
"The Protein Data Bank" . Nucleic Acids Research . 28 (1): 235–242.
doi :
10.1093/nar/28.1.235 .
PMC
102472 .
PMID
10592235 .
^
"ISCB — Past Presidents" .
Archived from the original on August 28, 2015. Retrieved September 3, 2015 .
^ Greenes, R. A.; Madsen, E.; Miller, R. A. (2003).
"American College of Medical Informatics Fellows and International Associates, 2002" . Journal of the American Medical Informatics Association . 10 (3): 281–286.
doi :
10.1197/jamia.M1326 .
PMC
400512 .
^
Ten Simple Rules
^
http://www.sdsc.edu/pb/ The Bourne lab web page
^
http://www.sdsc.edu/~bourne/CV.pdf Philip E. Bourne Ph.D. CV
^
Hypothes.is official website
^
NIH Names Dr. Philip E. Bourne First Associate Director for Data Science
^ Margolis, R.; Derr, L.; Dunn, M.; Huerta, M.; Larkin, J.; Sheehan, J.; Guyer, M.; Green, E. D. (2014).
"The National Institutes of Health's Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data" . Journal of the American Medical Informatics Association . 21 (6): 957–8.
doi :
10.1136/amiajnl-2014-002974 .
ISSN
1067-5027 .
PMC
4215061 .
PMID
25008006 .
^
a
b Bourne, Philip E.; Weissig, Helga (2003). Structural Bioinformatics . John Wiley & Sons.
^
a
b Gu, Jenny; Bourne, Philip E. (March 2009). Structural Bioinformatics (2nd ed.). Wiley-Blackwell.
ISBN
978-0-470-18105-8 .
^
a
b Anderson, Philip O.; Bourne, Philip E. (December 2009). Pharmacy Informatics . CRC Press.
ISBN
978-1-4200-7175-7 .
^
"The Bourne Commendation: Open Access Evangelist Wins 2009 Benjamin Franklin Award" . Bio-itworld.com. Retrieved 2011-02-27 .
^
OFL | Philip Bourne | Travel Blog
2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022
International National Academics Other