From Wikipedia, the free encyclopedia
American scientist and academic
Lincoln David Stein is a scientist and
Professor in
bioinformatics and
computational biology at the
Ontario Institute for Cancer Research.
[2]
[4]
[5]
Education
Stein completed a
Doctor of Medicine at
Harvard Medical School and a
PhD in
Cell Biology at
Harvard University both in 1989
[6] via the
MD-PhD program. His thesis investigated
gene cloning in
Schistosoma mansoni.
[6]
Career
From 1992-1997 he was a director of informatics at the
Massachusetts Institute of Technology (MIT) Genome Centre,
Whitehead Institute of Biomedical Research. From 1998 to 2004 he was an
associate professor at
Cold Spring Harbor Laboratory. He has been working at the Ontario Institute for Cancer Research since 2007.[
citation needed]
Research
Stein's current research projects
[2]
[5] include
Reactome,
[7]
WormBase,
[7]
BioPerl,
[8] Gramene,
[9]
ENCODE,
[10]
[11]
[12] the
Generic Model Organism Database,
[13] the
Sequence Ontology
[14] and
Cloud computing.
[15]
Stein is also the original developer of
CGI.pm and a contributor to
mod_perl, both widely used in the
Perl programming language for web applications, as well as many other
Perl modules and associated books.
[16]
[17]
[18]
[19]
[20]
Awards and honours
Stein was awarded the
Benjamin Franklin Award (Bioinformatics) in 2004.
[21] He was elected an
ISCB Fellow in 2016 by the
International Society for Computational Biology.
[1]
References
- ^
a
b Anon (2017).
"ISCB Fellows". iscb.org.
International Society for Computational Biology. Archived from
the original on 2017-03-20.
- ^
a
b
c
Lincoln Stein publications indexed by
Google Scholar
-
^
"116663444".
-
^
"The Ontario Institute for Cancer Research". Archived from
the original on 2011-04-22.
- ^
a
b
Lincoln Stein's publications indexed by the
Scopus bibliographic database. (subscription required)
- ^
a
b
Stein, Lincoln David (1989).
Cloning of developmentally regulated genes from Schistosoma mansoni. harvard.edu (PhD thesis). Harvard University.
OCLC
23368773.
- ^
a
b Croft, D.; O'Kelly, G.; Wu, G.; Haw, R.; Gillespie, M.; Matthews, L.; Caudy, M.; Garapati, P.; Gopinath, G.; Jassal, B.; Jupe, S.; Kalatskaya, I.; Mahajan, S.; May, B.; Ndegwa, N.; Schmidt, E.; Shamovsky, V.; Yung, C.; Birney, E.; Hermjakob, H.; d'Eustachio, P.; Stein, L. (2010).
"Reactome: A database of reactions, pathways and biological processes". Nucleic Acids Research. 39 (Database issue): D691–D697.
doi:
10.1093/nar/gkq1018.
PMC
3013646.
PMID
21067998.
-
^ Stajich, J. E.; Block, D.; Boulez, K.;
Brenner, S.; Chervitz, S.; Dagdigian, C.; Fuellen, G.; Gilbert, J.; Korf, I.; Lapp, H.; Lehväslaiho, H.; Matsalla, C.; Mungall, C. J.; Osborne, B. I.; Pocock, M. R.; Schattner, P.; Senger, M.;
Stein, L. D.; Stupka, E.; Wilkinson, M. D.;
Birney, E. (2002).
"The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618.
doi:
10.1101/gr.361602.
PMC
187536.
PMID
12368254.
-
^ Ware, D. H.; Jaiswal, P.; Ni, J.; Yap, I. V.; Pan, X.; Clark, K. Y.; Teytelman, L.; Schmidt, S. C.; Zhao, W.; Chang, K.; Cartinhour, S.; Stein, L. D.;
McCouch, S. R. (2002).
"Gramene, a Tool for Grass Genomics". Plant Physiology. 130 (4): 1606–1613.
doi:
10.1104/pp.015248.
PMC
1540266.
PMID
12481044.
-
^
Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T, Yip KY, Robilotto R, Rechtsteiner A; et al. (2010).
"Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project". Science. 330 (6012): 1775–1787.
Bibcode:
2010Sci...330.1775G.
doi:
10.1126/science.1196914.
PMC
3142569.
PMID
21177976.
{{
cite journal}}
: CS1 maint: multiple names: authors list (
link)
-
^ modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L; et al. (2010).
"Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE". Science. 330 (6012): 1787–1797.
Bibcode:
2010Sci...330.1787R.
doi:
10.1126/science.1198374.
PMC
3192495.
PMID
21177974.
{{
cite journal}}
: CS1 maint: multiple names: authors list (
link)
-
^ Contrino, S.; Smith, R. N.; Butano, D.; Carr, A.; Hu, F.; Lyne, R.; Rutherford, K.; Kalderimis, A.; Sullivan, J.; Carbon, S.; Kephart, E. T.; Lloyd, P.; Stinson, E. O.; Washington, N. L.; Perry, M. D.; Ruzanov, P.; Zha, Z.; Lewis, S. E.; Stein, L. D.; Micklem, G. (2011).
"ModMine: Flexible access to modENCODE data". Nucleic Acids Research. 40 (Database issue): D1082–D1088.
doi:
10.1093/nar/gkr921.
PMC
3245176.
PMID
22080565.
-
^
Stein, L. D.; Mungall, C.; Shu, S.; Caudy, M.; Mangone, M.; Day, A.; Nickerson, E.; Stajich, J. E.; Harris, T. W.; Arva, A.; Lewis, S. (2002).
"The Generic Genome Browser: A Building Block for a Model Organism System Database". Genome Research. 12 (10): 1599–1610.
doi:
10.1101/gr.403602.
PMC
187535.
PMID
12368253.
-
^ Eilbeck, K.;
Lewis, S. E.; Mungall, C. J.; Yandell, M.;
Stein, L.;
Durbin, R.;
Ashburner, M. (2005).
"The Sequence Ontology: A tool for the unification of genome annotations". Genome Biology. 6 (5): R44.
doi:
10.1186/gb-2005-6-5-r44.
PMC
1175956.
PMID
15892872.
-
^ Stein, L. D. (2010).
"The case for cloud computing in genome informatics". Genome Biology. 11 (5): 207.
doi:
10.1186/gb-2010-11-5-207.
PMC
2898083.
PMID
20441614.
-
^ Stein, Lincoln D. (1998).
Official guide to programming with CGI. pm: [the standard for building Web scripts]. New York: Wiley.
ISBN
978-0-471-24744-9.
-
^ Doug MacEachern; Stein, Lincoln D. (1999).
Writing Apache Modules with Perl and C. Sebastopol, CA: O'Reilly.
ISBN
978-1-56592-567-0.
-
^ Stein, Lincoln D. (2001). Network programming with Perl. Boston: Addison-Wesley.
ISBN
978-0-201-61571-5.
-
^ Stein, Lincoln D. (1997).
How to set up and maintain a Web site. Boston: Addison-Wesley.
ISBN
978-0-201-63462-4.
-
^ Stein, Lincoln D. (1998). Web security: a step-by-step reference guide. Boston: Addison-Wesley.
ISBN
978-0-201-63489-1.
-
^
http://www.bioinformatics.org/franklin/2004/ 2004 Benjamin Franklin Award Awarded to Lincoln D. Stein
|
---|
2009 | |
---|
2010 | |
---|
2011 | |
---|
2012 | |
---|
2013 | |
---|
2014 | |
---|
2015 | |
---|
2016 | |
---|
2017 | |
---|
2018 | |
---|
2019 | |
---|
2020 | |
---|
2021 | |
---|
2022 | |
---|
|
---|
International | |
---|
National | |
---|
Academics | |
---|
People | |
---|
Other | |
---|
|
---|
People | |
---|
Things | |
---|
Frameworks | |
---|
Books | |
---|
Software | |
---|
Related | |
---|
|