Permanently protected module
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local getArgs = require('Module:Arguments').getArgs

local p = {} -- module's table



-- Elements with wiki links

local am = {

	H = "Hydrogen",

	He = "Helium",

	Li = "Lithium",

	Be = "Beryllium",

	B = "Boron",

	C = "Carbon",

	N = "Nitrogen",

	O = "Oxygen",

	F = "Fluorine",

	Ne = "Neon",

	Na = "Sodium",

	Mg = "Magnesium",

	Al = "Aluminium",

	Si = "Silicon",

	P = "Phosphorus",

	S = "Sulfur",

	Cl = "Chlorine",

	Ar = "Argon",

	K = "Potassium",

	Ca = "Calcium",

	Sc = "Scandium",

	Ti = "Titanium",

	V = "Vanadium",

	Cr = "Chromium",

	Mn = "Manganese",

	Fe = "Iron",

	Co = "Cobalt",

	Ni = "Nickel",

	Cu = "Copper",

	Zn = "Zinc",

	Ga = "Gallium",

	Ge = "Germanium",

	As = "Arsenic",

	Se = "Selenium",

	Br = "Bromine",

	Kr = "Krypton",

	Rb = "Rubidium",

	Sr = "Strontium",

	Y = "Yttrium",

	Zr = "Zirconium",

	Nb = "Niobium",

	Mo = "Molybdenum",

	Tc = "Technetium",

	Ru = "Ruthenium",

	Rh = "Rhodium",

	Pd = "Palladium",

	Ag = "Silver",

	Cd = "Cadmium",

	In = "Indium",

	Sn = "Tin",

	Sb = "Antimony",

	Te = "Tellurium",

	I = "Iodine",

	Xe = "Xenon",

	Cs = "Caesium",

	Ba = "Barium",

	La = "Lanthanum",

	Ce = "Cerium",

	Pr = "Praseodymium",

	Nd = "Neodymium",

	Pm = "Promethium",

	Sm = "Samarium",

	Eu = "Europium",

	Gd = "Gadolinium",

	Tb = "Terbium",

	Dy = "Dysprosium",

	Ho = "Holmium",

	Er = "Erbium",

	Tm = "Thulium",

	Yb = "Ytterbium",

	Lu = "Lutetium",

	Hf = "Hafnium",

	Ta = "Tantalum",

	W = "Tungsten",

	Re = "Rhenium",

	Os = "Osmium",

	Ir = "Iridium",

	Pt = "Platinum",

	Au = "Gold",

	Hg = "Mercury (element)",

	Tl = "Thallium",

	Pb = "Lead",

	Bi = "Bismuth",

	Po = "Polonium",

	At = "Astatine",

	Rn = "Radon",

	Fr = "Francium",

	Ra = "Radium",

	Ac = "Actinium",

	Th = "Thorium",

	Pa = "Protactinium",

	U = "Uranium",

	Np = "Neptunium",

	Pu = "Plutonium",

	Am = "Americium",

	Cm = "Curium",

	Bk = "Berkelium",

	Cf = "Californium",

	Es = "Einsteinium",

	Fm = "Fermium",

	Md = "Mendelevium",

	No = "Nobelium",

	Lr = "Lawrencium",

	Rf = "Rutherfordium",

	Db = "Dubnium",

	Sg = "Seaborgium",

	Bh = "Bohrium",

	Hs = "Hassium",

	Mt = "Meitnerium",

	Ds = "Darmstadtium",

	Rg = "Roentgenium",

	Cp = "Copernicium",

	Nh = "Nihonium",

	Fl = "Flerovium",

	Mc = "Moscovium",

	Lv = "Livermorium",

	Ts = "Tennessine",

	Og = "Oganesson",

	

	-- Groups etc with element-like names

	Bn = 'Benzyl group',

	Bz = 'Benzoyl group',

	D = 'Deuterium',

	Et = 'Ethyl group',

	Ln = 'Lanthanide',

	Nu = 'Nucleophile',

	Ph = 'Phenyl group',

	R = 'Substituent',

	T = 'Tritium',

	Tf = 'Trifluoromethylsulfonyl group',

	X = 'Halogen',

}



-- Groups which are redirected from their normal target if wikilinked; never

-- autolinked.

local groups = {

	CH3 = 'Methyl group',

	CO3 = 'Carbonate',

	COOH = 'Carboxyl group',

	ClO = 'Hypochlorite',

	ClO2 = 'Chlorite',

	ClO3 = 'Chlorate',

	ClO4 = 'Perchlorate',

	H2O = 'Water of crystallization',

	H3O = 'Hydronium',

	NH2 = 'Amine group',

	NH4 = 'Ammonium',

	NO3 = 'Nitrate',

	PO3 = 'Phosphite',

	PO4 = 'Phosphate',

	SH = 'Thiol group',

	SO3 = 'Sulfite',

	SO4 = 'Sulfate',

	SeH = 'Selenol group'

}



local T_ELEM = 0         -- token types

local T_NUM = 1          -- number

local T_OPEN = 2         -- open '('

local T_CLOSE = 3        -- close ')'

local T_PM_CHARGE = 4    -- + or −

local T_WATER = 6        -- .xH2O x number

local T_CRYSTAL = 9      -- .x

local T_CHARGE = 8       -- charge (x+), (x-)

local T_SUF_CHARGE = 10  -- suffix and charge e.g. 2+ from H2+

local T_SUF_CHARGE2 = 12 -- suffix and (charge) e.g. 2(2+) from He2(2+)

local T_SPECIAL = 14     -- starting with \ e.g. \d for double bond (=)

local T_SPECIAL2 = 16    -- starting with \y{x} e.g. \i{12} for isotope with mass number 12

local T_ARROW_R = 17     -- match: ->

local T_ARROW_EQ = 18    -- match: <->

local T_UNDERSCORE = 19  -- _{ ... }

local T_CARET = 20       -- ^{ ... }

local T_LINKOPEN = 21    -- Opening of link, always like "[[target|" even if the source wasn't

local T_NOCHANGE = 30    -- Anything else like ☃



function su(up, down)

	if up == "" then

		return ('<sub class="template-chem2-sub">%s</sub>'):format(down)

	end

	if down == "" then

		return ('<sup class="template-chem2-sup">%s</sup>'):format(up)

	end

    return ('<span class="template-chem2-su"><span>%s</span><span>%s</span></span>'):format(up, down)

end



function DotIt()

    return '&middot;'

end



function item(f) -- (iterator) returns one token (type, value) at a time from the formula 'f'

    local i = 1



    return function ()

        local t, x = nil, nil



        if (i == 1) and f:match('^[0-9]', i) then 

            x = f:match('^[%d.]+', i); t = T_NOCHANGE; i = i + x:len();   -- matching coefficient (need a space first)



        elseif i <= f:len() then

            x = f:match('^%s+[%d.]+', i); t = T_NOCHANGE;  -- matching coefficient (need a space first)

            if not x then x = f:match('^%s[+]', i); t = T_NOCHANGE; end       -- matching + (H2O + H2O)

            if not x then x = f:match('^%&%#[%w%d]+%;', i); t = T_NOCHANGE; end       -- &#...;

            if not x then x = f:match('^%<%-%>', i); t = T_ARROW_EQ; end       -- matching <->

            if not x then x = f:match('^%-%>', i); t = T_ARROW_R; end       -- matching ->

            if not x then x = f:match('^%u%l*', i); t = T_ELEM; end        -- matching symbols like Aaaaa

            if not x then x = f:match('^%d+[+-]', i); t = T_SUF_CHARGE; end        -- matching x+, x-

            if not x then x = f:match('^%d+%(%d*[+-]%)', i); t = T_SUF_CHARGE2; end        -- matching x(y+/-), x(+/-)

            if not x then x = f:match('^%(%d*[+-]%)', i); t = T_CHARGE; end        -- matching (x+) (xx+), (x-) (xx-)

            if not x then x = f:match('^[%d.]+', i); t = T_NUM; end        -- matching number

            if not x and (f:match('^%[%[%[[^[]', i) or f:match('^%[[^[]', i)) then

            	i = i + 1; return T_OPEN, '&#91;' end -- escape [[[X or [X (relevant to auto-linking)

            if not x and f:sub(i, i + 1) == '[[' then

            	x = f:match('^%[%[([^]|]*)', i) -- link target

            	local len = x:len() + 3

            	x = '[[' .. (groupsx or amx or x) .. '|'  -- override link target for common groups



            	if f:sub(len + i, len + i) == ']' then

            		-- We're going to read the link twice, once as target and once as

            		-- chemical markup, e.g. [[CH3]] => "[[CH3|", "CH3]]"

            		i = i + 2

            	else

            		i = i + len

            	end

            	return T_LINKOPEN, x

            end

            if not x then x = f:match('^[(|{|%[]', i); t = T_OPEN; end     -- matching ({[

            if not x then x = f:match('^[)|}|%]]', i); t = T_CLOSE; end    -- matching )}]

            if not x then x = f:match('^[+-]', i); t = T_PM_CHARGE; end    -- matching + or -

            if not x then x = f:match('^%*[%d.]*H2O', i); t = T_WATER; end -- Crystal water

            if not x then x = f:match('^%*[%d.]*', i); t = T_CRYSTAL; end  -- Crystal

            if not x then x = f:match('^[\\].{%d+}', i); t = T_SPECIAL2; end -- \y{x}

            if not x then x = f:match('^[\\].', i); t = T_SPECIAL; end -- \x

            if not x then x = f:match('^_{[^}]*}', i); t = T_UNDERSCORE; end -- _{...}

            if not x then x = f:match('^^{[^}]*}', i); t = T_CARET; end   -- ^{...}

            if not x then x = f:match('^.', i); t = T_NOCHANGE; end  --the rest - one by one

            if x then i = i + x:len(); else i = i + 999; error("Invalid character in formula! : "..f) end

        end

        return t, x

    end

end



function p._chem(args)

	

    local f = args1 or ''



	f = mw.text.decode( f, true ) -- handle entity input (like &minus;): decode right away

    f = string.gsub(f, "–", "-")  -- replace – with - (hyphen not ndash)

    f = string.gsub(f, "−", "-")  -- replace – with - (hyphen not minus sign)



    local formula = ''

    local t, x



    local link = args'link' or ""

    local auto = args'auto' or ""

    local seen = {}

    local _debug = false



    if not (link == '') then formula = formula .. "[[" .. link .. "|"; end   -- wikilink start [[link|

 

    for t, x in item(f) do 

    	if _debug then

    		formula = ("%s\n* %d %s"):format(formula, t, x)

        elseif t == T_ELEM then

            if (auto == '') or (not amx]) or seenx then formula = formula .. x

            else formula = ("%s[[%s|%s]]"):format(formula, amx], x); seenx = true

            end

        elseif t == T_COEFFICIENT then formula = formula .. x

        elseif t == T_NUM        then formula = formula .. su("", x);

        elseif t == T_LINKOPEN   then formula = formula .. x;      -- [[Link|

        elseif t == T_OPEN       then formula = formula .. x;          -- ([{

        elseif t == T_CLOSE      then formula = formula .. x;          -- )]}

        elseif t == T_PM_CHARGE  then formula = formula .. su(x:gsub("-", "−"), "");

        elseif t == T_SUF_CHARGE then 

            formula = formula .. su(x:match("[+-]"):gsub("-", "−"), x:match("%d+"), "");

        elseif t == T_SUF_CHARGE2 then 

            formula = formula .. su(x:match("%(%d*[+-]"):gsub("-", "−"):sub(2, -1), x:match("%d+"))

        elseif t == T_CHARGE then

        	formula = formula .. "<sup>"

        	if x:match("%d+") then formula = formula .. x:match("%d+"); end

        	formula = formula .. x:match("[%+-]"):gsub("-", "−") .. "</sup>";

        	-- Cannot concatenat a nil value from x:match("%d+");

        elseif t == T_CRYSTAL then formula = formula .. DotIt() .. string.gsub( x, "*", '', 1 );

        elseif t == T_SPECIAL then

            parameter = x:sub(2, 2) -- x fra \x  

            if     parameter == "s" then formula = formula .. "−"   -- single bond

            elseif parameter == "d" then formula = formula .. "="   -- double bond

            elseif parameter == "t" then formula = formula .. "≡"   -- tripple bond

            elseif parameter == "q" then formula = formula .. "≣"   -- Quadruple bond

            elseif parameter == "h" then formula = formula .. "η"   -- η, hapticity

            elseif parameter == "*" then formula = formula .. "*"   -- *, normal *

            elseif parameter == "-" then formula = formula .. "-"   -- -

            elseif parameter == "\\" then formula = formula .. "\\"   -- \

            elseif parameter == "\'" then formula = formula .. "&#39;"   -- html-code for '

            end

        elseif t == T_SPECIAL2 then  -- \y{x}

            parameter = x:sub(2, 2) -- y fra \y{x} 

            if parameter  == "h" then --[[Hapticity]]

                if (auto == '') then formula = formula .. "η<sup>" .. x:match('%d+') .. "</sup>-"

                else

                    formula = formula .. "[[Hapticity|η<sup>" .. x:match('%d+') .. "</sup>]]-"

                end

            elseif parameter == "m" then formula = formula .. "μ<sub>" .. x:match('%d+') .. "</sub>-" -- mu ([[bridging ligand]])

            end

        elseif t == T_WATER then 

            if x:match("^%*[%d.]") then 

                formula = formula .. DotIt() .. x:match("%f[%.%d]%d*%.?%d*%f[^%.%d%]]") .. "H<sub>2</sub>O";

            else

                formula = formula .. DotIt() .. "H<sub>2</sub>O";

            end

        elseif t == T_UNDERSCORE  then formula = formula .. su("", x:gsub("-", "−"):sub(3, -2)) -- x contains _{string}

        elseif t == T_CARET       then formula = formula .. su(x:gsub("-", "−"):sub(3, -2), "") -- x contains ^{string}

        elseif t == T_ARROW_R     then formula = formula .. " → "

        elseif t == T_ARROW_EQ    then formula = formula .. " ⇌ "

        elseif t == T_NOCHANGE    then formula = formula .. x;  -- The rest - everything which isn't captured by the regular expresions.

        else error('unreachable - ???') end -- in fact, unreachable

    end



    if not (link == nil or link == '') then formula = formula .. "]]"; end   -- wikilink closing ]]

    formula = mw.getCurrentFrame():preprocess('<templatestyles src="Module:Chem2/styles.css"/>') ..

        '<span class="chemf nowrap">' .. formula .. '</span>'

    if args2 or args3 or args4 then

        formula = formula .. require('Module:If preview')._warning{

'&#123;&#123;chem2&#125;&#125; was called with multiple positional arguments. It should have just one, e.g. &#123;&#123;chem2&#124;H2O&#125;&#125;.'

        }

    end

    return formula

end



function p.chem(frame)

    local args = getArgs(frame)

    return p._chem(args)

end



-- PRIVATE function to generate documentation.

function p._autodoc(frame)

	local TableTools = require('Module:TableTools') -- we don't want to load this on articles for no reason

	local result = {

		'===Elements and element-style symbols===\nThese may be automatically linked or used as if they were redirects.\n',

		'{| class="wikitable"\n! Symbol !! Link target\n'

	}

	for symbol, target in TableTools.sortedPairs(am) do

		result#result + 1 = ('|-\n| %s || [[%s]]\n'):format(symbol, target)

	end

	result#result + 1 = '|}\n===Groups===\nThese must be linked manually; they work as if they were redirects.\n'

	result#result + 1 = '{| class="wikitable"\n! Symbol !! Link target\n'

	for symbol, target in TableTools.sortedPairs(groups) do

		result#result + 1 = ('|-\n| %s || [[%s]]\n'):format(symbol, target)

	end

	result#result + 1 = '|}'

	return table.concat(result)

end



return p