This list of sequenced fungi genomes contains all the fungal species known to have publicly available complete genome sequences that have been assembled, annotated and published; draft genomes are not included, nor are organelle only sequences.
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Ascomycota
Dothideomycetes
- Aureobasidium pullulans, A. melanogenum, A. subglaciale and A. namibiae, polyextremotolerant (2014 [1])
- Hortaea werneckii, extremely halotolerant (2013 [2] 2017 [3])
- Leptosphaeria maculans, plant pathogen (2011 [4])
- Macrophomina phaseolina, plant pathogen (2012 [5])
- Mycosphaerella fijiensis, plant pathogen (2007 [6])
- Mycosphaerella graminicola IPO323, wheat pathogen (2008 [7])
- Phaeosphaeria nodorum SN15, wheat pathogen (2005 [8])
- Pyrenophora tritici-repentis Pt-1C-BFP, wheat pathogen (2007 [9])
Eurotiomycetes
- Ajellomyces capsulata several strains, Darling's disease (2009, unpubl. [10])
- Ajellomyces dermatitidis several strains (2009, unpubl. [11])
- Arthroderma benhamiae CBS 112371, skin infection (2010, unpubl. [12])
- Arthroderma gypseum CBS 118893, athlete's foot (2008 [13])
- Arthroderma otae CBS 113480, athlete's foot (2008 [13])
- Aspergillus aculeatus ATCC16872, industrial use (2010 [14])
- Aspergillus carbonarius ITEM 5010, food pathogen (2009 [15])
- Aspergillus clavatus Strain:NRRL1 (2008 [16])
- Aspergillus fumigatus Strain:A1163, human pathogen (2008 [16])
- Aspergillus fumigatus Strain:Af293, human pathogen (2005 [17])
- Aspergillus kawachii IFO 4308, food industry (2011 [18])
- Aspergillus nidulans Strain:FGSC A4, model organism (2005 [19])
- Aspergillus niger Strain:ATCC 1015 ( DOE Joint Genome institute)
- Aspergillus niger Strain:CBS 513.88, industrial use (2007 [20])
- Aspergillus oryzae Strain:RIB40, industrial use (2005 [21])
- Aspergillus terreus NIH 2624, statin producer and pathogen (2005, unpubl. [22])
- Coccidioides immitis, human pathogen, Valley fever (2009 [23])
- Coccidioides posadasii C735 delta SOWgp, human pathogen, Valley fever (2009 [23])
- Neosartorya fischeri Strain:NRRL181 (2008 [16])
- Paracoccidioides brasiliensis, several strains, human pathogen (2007 [24]
- Penicillium chrysogenum Strain: Wisconsin54-1255, industrial use (2008 [25])
- Penicillium digitatum Strain PHI26 (2012 [26])
- Penicillium digitatum Strain Pd1 (2012 [26]
- Talaromyces marneffei, human pathogen (2011 [27]
- Uncinocarpus reesii (2009 [23])
Leotiomycetes
- Blumeria graminis ffsp hordei Strain:DH14, plant pathogen (2010)
- Botrytis cinerea (Botryotinia fuckeliana) Strain:B05.10 and T4, plant pathogen (2011 [28])
- Glarea lozoyensis (2012 [29])
- Sclerotinia sclerotiorum Strain:1980 (2011 [28])
- Ascocoryne sarcoides Strain: NRRL50072 (2012 [30])
Pezizomycetes
- Cladobotryum protrusum (2019 [31])
- Tuber melanosporum Mel28, Périgord black truffle (2010 [32])
Saccharomycetes
- Ashbya gossypii Strain:ATCC 10895, plant pathogen (2004 [33])
- Candida albicans Strain:SC5314, human pathogen (2004 [34])
- Candida albicans Strain:WO-1, human pathogen (2009 [35])
- Candida dubliniensis CD36, human pathogen (2009 [36])
- Candida glabrata Strain:CBS138, human pathogen (2004 [37])
- Candida guilliermondii, human pathogen (2009 [35])
- Candida lusitaniae, human pathogen (2009 [35])
- Candida parapsilosis, human pathogen (2009 [35])
- Candida orthopsilosis, human pathogen (2012 [38])
- Candida tropicalis, human pathogen (2009 [35])
- Debaryomyces hansenii Strain:CBS767, industrial use (2004 [37])
- Debaryomyces hansenii Strain:MTCC 234, salt-tolerant (2012 [39])
- Dekkera bruxellensis Strain:CBS2499, wine yeast (2012 [40])
- Hansenula polymorpha NCYC 495 leu1.1, industrial use (2010 [41])
- Kluyveromyces aestuarii ATCC 18862 (2010, unpubl. [42])
- Kluyveromyces lactis Strain:CLIB210, industrial use (2004 [37])
- Kluyveromyces wickerhamii UCD 54-210 (2010, unpubl. [43])
- Lachancea kluyveri ( Saccharomyces kluyveri) NRRL Y-12651, plant pathogen (2009 [44])
- Lodderomyces elongisporus, human pathogen (2009 [35])
- Naumovozyma castellii Strain:AS 2.2404, CBS 4309 (Saccharomyces castellii; 2003, [45] 2011 [46])
- Naumovozyma dairenensis Strain:CBS 421 (2011 [46])
- Saccharomyces bayanus (2003, [45] [47] 2011 [48])
- Saccharomyces arboricolus (2013, [49])
- Saccharomyces cerevisiae Strain:JAY291, industrial/model (2009 [50])
- Saccharomyces cerevisiae Strain:S288C, industrial/model (1996 [51])
- Saccharomyces cerevisiae Strain:Sigma1278b, industrial/model (2010 [52])
- Saccharomyces kudriavzevii (2003 [45] [48])
- Saccharomyces mikatae (2003, [45] [47] 2011 [48])
- Saccharomyces paradoxus (2003 [47] 2009 [53])
- Saccharomyces pastorianus Weihenstephan 34/70, industrial, beer (2009 [54])
- Scheffersomyces stipitis (Pichia stipitis) CBS 6054, lignin/xylose degrader (2007 [55])
- Spathaspora passalidarum NRRL Y-27907, model xylose fermenter (2010 [56])
- Tetrapisispora phaffii van der Walt Y 89, CBS 4417 (2011 [46])
- Torulaspora delbrueckii Strain:Wallerstein 129, CBS 1146 (2011 [46])
- Vanderwaltozyma polyspora DSM 70294 (2007 [57])
- Yarrowia lipolytica Strain:CLIB99, industrial use (2004 [37])
- Zygosaccharomyces rouxii strain CBS732, food spoiler (2009 [44])
Schizosaccharomycetes
- Schizosaccharomyces japonicus yFS275, model for invasive growth (2006 [58])
- Schizosaccharomyces pombe Strain:972h, model eukaryote (2002 [59])
Sordariomycetes
- Colletotrichum graminicola, corn pathogen (2012 [60])
- Colletotrichum higginsianum, Arabidopsis thaliana pathogen (2012 [60])
- Chaetomium cochliodes Strain:CCM F-232, soil fungus (2016 [61])
- Chaetomium globosum Strain:CBS 148.51, soil fungus (2005 [62])
- Chaetomium thermophilum Strain:CBS 144.50, soil fungus (2011 [63])
- Fusarium oxysporum f. sp. lycopersici 4287, human/plant pathogen (2010 [64])
- Gibberella moniliformis 7600, plant pathogen (2010 [64])
- Gibberella zeae PH-1, plant pathogen (2008 [65])
- Gaeumannomyces graminis tritici R3-111a-1 (2010, unpubl. [66])
- Grosmannia clavigera kw1407, plant pathogen (2011 [67])
- Magnaporthe grisea, plant pathogen (20054 [68])
- Metarhizium acridum CQMa 102, and
- Metarhizium anisopliae ARSEF 23, insect pathogens (2011 [69])
- Neurospora crassa, model eukaryote (2003 [70])
- Neurospora tetrasperma FGSC 2508 mat A, model (2010 [71])
- Nectria haematococca MPVI, plastic/pest./lignin degrader (2009 [72])
- Podospora anserina :S mat+ [73]
- Sporotrichum thermophile, thermophilic cellulose degrader (2010 [74])
- Thielavia terrestris, model thermophile/industrial (2010 [75])
- Trichoderma atroviride, industrial/soil, (2010 [76])
- Trichoderma reesei QM6a, biomass-degrading (2008 [77])
- Trichoderma virens Gv29-8, industrial/pathogen (2007 [78])
- Verticillium albo-atrum VaMs.102, plant pathogen (2008, unpubl. [79])
Basidiomycota
Agaricomycetes
- Agaricus bisporus var. bisporus Strain:H97, Champignon (2009 [80])
- Agrocybe aegerita, ack Poplar or Sword-belt Mushroom (2018 [81]) )
- Auricularia delicata (2012 [82])
- Auricularia heimuer, Chinese Auricularia (2019 [83])
- Coniophora puteana (2012 [82])
- Coprinopsis cinerea (Coprinus cinereus), model organism for multicellular fungi (2010 [84])
- Dichomitus squalens (2012 [82])
- Fibroporia radiculosa Strain:TFFH 294 (2012 [85])
- Fomitiporia mediterranea (2012 [82])
- Fomitopsis pinicola (2012 [82])
- Ganoderma leucocontextum strain:GL72 (2023) [86]
- Gloeophyllum trabeum (2012 [82])
- Hebeloma cylindrosporum http://genome.jgi.doe.gov/Hebcy2/Hebcy2.home.html
- Heterobasidion annosum, plant pathogen (2009 [87])
- Laccaria bicolor Strain:S238N-H82, mycorrhiza (2008 [88])
- Lentinula edodes, Shiitake mushroom (2016 [89])
- Moniliophthora perniciosa, Witches' Broom Disease of cacao (2008 [90])
- Oudemansiella raphanipes, edible mushroom "Changgengu"(2023 [91])
- Phanerochaete chrysosporium Strain:RP78, mycoremediation (2004 [92])
- Piriformospora indica endophyte (2011 [93])
- Pleurotus ostreatus, industrial/lignin degrader (2010 [94])
- Pleurotus tuber-regium, White-rot fungus (2018 [95])
- Postia placenta, cellulose degrader (2008 [77] [96])
- Punctularia strigosozonata (2012 [82])
- Schizophyllum commune, mushroom (2010 [97])
- Serpula lacrymans, plant pathogen (2011 [98])
- Stereum hirsutum (2012 [82])
- Trametes versicolor (2012 [82])
- Wolfiporia cocos (2012 [82])
Dacrymycetes
- Dacryopinax spathularia, edible jelly fungus (2024) [99]
Pucciniomycetes (formerly Urediniomycetes)
- Melampsora laricis-populina, pathogen of poplars (2008 [100])
- Puccinia graminis f. sp. tritici, plant pathogen (2011 [101] [102] [103])
- Puccinia triticina 1-1 BBBD Race 1, pathogen of wheat( [103])
- Rhodotorula graminis strain WP1, plant symbiont (2010 [104])
- Sporobolomyces roseus, associated with plants ( [105])
Tremellomycetes
- Cryptococcus (Filobasidiella) neoformans JEC21, human pathogen (2005, [106] other strains unpubl. [107])
- Dacryopinax sp. (2012 [82])
- Tremella mesenterica (2012 [82])
Ustilaginomycetes
- Malassezia globosa CBS 7966, dandruff-associated (2007 [108])
- Malassezia restricta CBS 7877, dandruff-associated (2007 [108])
- Sporisorium rellianum, plant pathogen (2010 [109])
- Ustilago maydis, plant pathogen (2006 [110])
Wallemiomycetes
- Wallemia ichthyophaga, obligate halophile (2013 [111])
- Wallemia sebi, xerophile (2012 [112])
Chytridiomycota
Chytridiomycota includes fungi with spores that have flagella ( zoospores) and are a sister group to more advanced land fungi that lack flagella. Several chytrid species are pathogens, but have not had their genomes sequenced yet.
- Batrachochytrium dendrobatidis JEL423, amphibian pathogen (2006 [113])
- Batrachochytrium dendrobatidis JAM81, amphibian pathogen (2006 [114])
- Spizellomyces punctatus DAOM BR117 (2009 [115])
- Gonapodya prolifera JEL478 ( Monoblepharidomycetes) (2011 [116])
- Chytriomyces sp. MP 71
- Entophlycits helioformis JEL805
- Gaertneriomyces semiglobifer Barr43
- Globomyces pollinis-pini
- Rhizoclomsatium globosum
Blastocladiomycota
- Allomyces macrogynus ATCC 38327 ( Blastocladiomycota) (2009 [115])
- Catenaria anguillulae PL171 ( Blastocladiomycota) [117]
Neocallimastigomycota
- Piromyces sp. E2 ( Neocallimastigomycota) (2011 [118])
- Anaeromyces sp. S4
- Neocallimastix sp. G1
- Orpinomyces sp. C1A
Microsporidia
- Encephalitozoon cuniculi, human pathogen (2001 [119])
- Encephalitozoon intestinalis ATCC 50506, human pathogen (2010 [120])
- Enterocytozoon bieneusi, human pathogen particularly in the context of HIV infection (~60% of genome 2009, [121] 2010 [122])
- Nosema ceranae, honey bee pathogen (2009 [123])
- Octosporea bayeri OER 3-3, Daphnia pathogen (2009 [124])
Mucoromycota
Mucoromycotina
- Absidia padenii
- Absidia repens
- Backusella circina
- Circinella umbellata
- Cokeromyces recurvatus
- Cunninghamella echinulata
- Dichotomocladium elegans
- Fennellomyces sp.
- Gilbertella persicaria var. persicaria
- Gongronella butleri
- Hesseltinella vesiculosa
- Lichtheimia corymbifera
- Lichtheimia hyalospora
- Mucor circinelloides
- Mucor cordense
- Mucor indicus
- Mucor heterogamus
- Mycotypha africana
- Parasitella parasitica
- Phascolomyces articulosus
- Phycomyces blakesleeanus
- Phycomyces nitens
- Pilaira anomala
- Pilobolus umbonatus
- Radiomyces spectabilis
- Rhizopus delemar
- Rhizopus oryzae, human pathogen ( mucormycosis) (2009 [125])
- Rhizopus microsporus
- Saksenaea vasiformis
- Spinellus fuiger
- Sporodiniella umbellata
- Syncephalastrum racemosum
- Thamnidium elegans
- Umbelopsis isabellina
- Umbelopsis ramanniana
- Zychaea mexicana
Glomeromycotina
Mortierellomycotina
- Mortierella alpina Strain: ATCC 32222, commercial source of arachidonic acid (2011 [126])
- Lobosporangium transversale
- Mortierella elongata
- Mortierella humilis
- Mortierella multidivaricata
- Mortierella verticillata
Zoopagomycota
Kickxellomycotina
- Coemansia reversa
- Coemansia spiralis
- Kickxella alabastrina
- Linderina pennicpora
- Martensiomyces pterosporus
- Ramicandelaber brevisporus
- Smittium culicis
- Smittium mucronatum
- Zancudomyces culisetae
Entomophthoromycotina
- Basidiobolus meristosporus
- Conidiobolus coronatus
- Condidiobolus thromboides
- Massospora cicadina [127]
Zoopagomycotina
- Syncephalis fuscata
- Syncephalis plumigaleata
- Syncephalis pseudoplumigaleata
- Piptocephalis cylindrospora
See also
- List of sequenced animal genomes
- List of sequenced archaeal genomes
- List of sequenced bacterial genomes
- List of sequenced eukaryotic genomes
- List of sequenced plant genomes
External links
- Fungal Genome Initiative (includes draft genomes)
- UniProt query (complete proteome and fungi)
References
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