Hydrobacteria is a
taxon containing approximately one-third of
prokaryote species, mostly
gram-negative bacteria and their relatives.[1] It was found to be the closest relative of an even larger group of
Bacteria,
Terrabacteria, which are mostly
gram-positive bacteria.[2][1] The name Hydrobacteria (hydro = "water") refers to the moist environment inferred for the common ancestor of those species. In contrast, species of
Terrabacteria possess adaptations for life on land.[2][1]
Some unrooted molecular phylogenetic analyses[5][6] have not supported this dichotomy of
Terrabacteria and Hydrobacteria, but the most recent genomic analyses,[3][4] including those that have focused on rooting the tree,[3] have found these two groups to be monophyletic.
Hydrobacteria and
Terrabacteria were inferred to have diverged approximately 3 billion years ago, suggesting that land (continents) had been colonized by prokaryotes at that time.[1] Together, Hydrobacteria and Terrabacteria form a large group containing 97% of prokaryotes and 99% of all species of Bacteria known by 2009, and placed in the taxon Selabacteria, in allusion to their phototrophic abilities (selas = light).[7] Currently, the bacterial phyla that are outside of Hydrobacteria +
Terrabacteria, and thus justifying the taxon Selabacteria, are debated and may or may not include
Fusobacteria.[3][4]
"Gracilicutes," which was described in 1978 by Gibbons and Murray,[8] is sometimes used in place of Hydrobacteria. However, "Gracilicutes" included cyanobacteria (a member of
Terrabacteria) and was not constructed under the now generally accepted
three-domain system.[8] More recently, a redefinition of "Gracilicutes" was proposed[9] but it did not include a molecular phylogeny or statistical analyses. Also, it did not follow the
three-domain system, claiming instead that the lineage of eukaryotes + Archaea is nested within Bacteria as a close relative of
Actinomycetota, a tree not supported in any molecular phylogeny.
Phylogeny
A timetree redrawn from Battistuzzi and Hedges (2009) shows the division of Hydrobacteria and Terrabacteria.[2][1]
The definition of two major divisions within the domain
Bacteria, Hydrobacteria and
Terrabacteria, has come largely from rooted phylogenetic analyses of genomes.[2][1][3][4] Unrooted analyses have not fully supported this division,[6][5] drawing attention to the importance of rooted trees of life.
The two recent analyses of bacterial phylogeny both supported the division of Hydrobacteria and Terrabacteria.[3][4] However, they interpreted the evolution of the cell wall differently, with one concluding that the last common ancestor of Bacteria was a monoderm (
gram-positive bacteria[3]) and the other concluding that it was a diderm (
gram-negative bacteria[4]). The following tree is redrawn from one of those two recent studies,[3] showing the phylogeny of bacterial phyla and superphyla, with the position of Fusobacteria being unresolved and DST being the closest relative of
Terrabacteria:
A phylogeny of bacterial phyla and superphyla according to Coleman et al. (2021).[3] Hydrobacteria was referred to as "Gracilicutes" in that study.
References
^
abcdefgBattistuzzi, F. U.; Hedges, S. B. (1 February 2009). "A Major Clade of Prokaryotes with Ancient Adaptations to Life on Land". Molecular Biology and Evolution. 26 (2): 335–343.
doi:
10.1093/molbev/msn247.
PMID18988685.
^
abHug, Laura A.; Baker, Brett J.; Anantharaman, Karthik; Brown, Christopher T.; Probst, Alexander J.; Castelle, Cindy J.; Butterfield, Cristina N.; Hernsdorf, Alex W.; Amano, Yuki; Ise, Kotaro; Suzuki, Yohey; Dudek, Natasha; Relman, David A.; Finstad, Kari M.; Amundson, Ronald; Thomas, Brian C.; Banfield, Jillian F. (May 2016).
"A new view of the tree of life". Nature Microbiology. 1 (5): 16048.
doi:10.1038/nmicrobiol.2016.48.
PMID27572647.
S2CID3833474.
^Battistuzzi, FU; Hedges, SB (2009). "Eubacteria". In Hedges, SB; Kumar, S (eds.). The Timetree of Life. New York: Oxford University Press. pp. 106–115.